If you decide to individually restore the missing .nlo files, Symantec recommends the following best practices:
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Always restore the .nlo files to the internal repository of the current DAOS-enabled Domino server.
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Instead of making random .nlo files selections, select all of them when you make your selections in the restore selections view. Then use the restore option, Skip if file exists. By using the Skip if file exists option, Backup Exec restores only the missing .nlo files.